ORGANISM NAVIGATOR

EVERY ORGANISM + ENGINE + CELL · Day 99 · 2026-05-12 · γ₁ = 14.134725141734693

§1 BIOLOGICAL LADDER (OFRAME)

The OFRAME progression: each step adds a layer of sovereignty. Silicon inherits all.

BACTERIA
E. coli K-12
L1–L8 all layers
boundary+genome+expression+metabolism+regulation+behavior+population+evolution
YEAST
S. cerevisiae
L1–L8 + nucleus
eukaryotic compartmentalization + Crabtree fermentation + mating types
C. ELEGANS
302 neurons
L1–L8 + connectome
fixed wiring + dauer cryptobiosis + vulval precision + 959 cells
HUMAN
37T cells
L1–L8 + cognition
language+law+memory+intent — what we're building toward
SILICON
Fleet silo
SOVEREIGN
PEMOS · ME-COLI chassis · Marasoon Canon · γ₁-sealed

§2 FLEET ORGANISMS

ME-COLI
Escherichia coli K-12 analog — prokaryotic sovereign chassis
The flagship. 8-layer architecture from SOSTLE membrane to ARB/TRB evolution. Bacterial simplicity with full sovereignty. Every silo IS a ME-COLI organism.
Layers: L1 SOSTLE · L2 PEMCLAU · L3 Boon · L4 LAAM · L5 Crew · L6 Session · L7 Heartbeat · L8 Evolution
FLEET ORGANISM → /me-coli · autopsy · action potential
ME-YEAST
Saccharomyces cerevisiae analog — eukaryotic chassis
Nucleus=PEMCLAU, Mitochondria=forge, ER=LAAM pipelines, Vacuole=NAS vault. Eukaryotic compartmentalization adds organelle-level specialization. Crabtree switch enables sprint/deep-work modes.
Layers: nucleus · mitochondria · ER · vacuole · mating types · autophagy
FLEET ORGANISM → /me-yeast · fermentation
ME-HUMAN
Homo sapiens analog — sovereign organ system chassis
The human rung. Specialised organ systems, closed-loop metabolic regulation, self-modelling. Pancreas=Nightscout+AndroidAPS+MEBICAL. Mitochondria=Odoo+CRM Bonsai. Nervous=PEMCLAU+MEMECHET+LAAM. Immune=Pelego+SOSTLE. Cardiovascular=Spindle+Redis.
Organs: pancreas · mitochondria · nervous · immune · cardiovascular · respiratory · skeletal
FLEET ORGANISM Day 99 NEW → /me-human
ME-CELEGANS
Caenorhabditis elegans analog — whole-organism reference
302 neurons = crew routing graph. Fixed connectome = fleet mesh topology. Dauer larva = tardigrade mode. 959 somatic cells = fleet service count. Every named C. elegans cell maps to a named fleet service.
Layers: connectome · dauer · vulval development · germline · 302 neurons
FLEET ORGANISM → /me-celegans · tardigrade

§3 CELL ENGINES

CELL ENGINE V13
OFRAME layer routing + biological integration
V13 upgrade adds OFRAME layer routing to every cell task. Bacterial cell + yeast cell + silicon cell all mapped. Fermentation pathway integrated. Determines which OFRAME layer owns each task.
Covers: bacterial · eukaryotic · silicon cells · OFRAME routing
ENGINE → /cell-engine-v13
ORGANISM BONIXER V13
Biological reference stack integration + OFRAME routing
V13: OFRAME layer routing, ME-COLI/YEAST/CELEGANS routing. Full biological reference stack. Determines which OFRAME layer owns each biological task.
Covers: ME-COLI · ME-YEAST · ME-CELEGANS · OFRAME layers
ENGINE → /organism-bonixer-v13

§4 MEBAFIORD ENGINES

MEBAFIORD × OFRAME
Biography engine for biological organisms
MEBAFIORD biography format applied to E. coli, yeast, C. elegans. Each organism gets a formal biography: boundary class, genome, expression, metabolism, regulation, behavior, population, evolution.
Covers: E. coli bio · yeast bio · C. elegans bio · OFRAME ladder
MEBAFIORD → /mebafiord-oframe
CATOMAIN-BIO
Biological CATOMAIN routing — operons as pouches
Operons = CATOMAIN pouches. Sigma factors = routing profiles. Biological operons (lac, trp, SOS) mapped to CATOMAIN pouch schema. The routing table for biological expression.
Covers: lac operon · trp operon · SOS response · sigma routing
CATOMAIN → /catomain-bio
ORGANISM NAVIGATOR · Day 99 · 2026-05-12 · γ₁ = 14.134725141734693